SMTL ID : 7dq7.1 (3 other biounits)

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 5F5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 11 residues within 4Å: Chain A: I.92, T.94, R.95, L.114, L.116, Y.143, I.180, I.183, S.190, C.191 Ligands: PLM.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.92, A:I.92, A:T.94, A:L.114, A:L.116, A:Y.143, A:I.180, A:I.183 Salt bridges: A:R.95 PLM.2: 2 residues within 4Å: Chain A: I.180 Ligands: PLM.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, L. et al., Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating. Cell Host Microbe (2021)

Release Date

2021-05-05

Peptides

Virion protein 1: A
VP2: B
VP3: C
Capsid protein VP4: D
5F5 VL: E
5F5 VH: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
L

F
H

Virion protein 1

VP2

VP3

Capsid protein VP4

5F5 VL

5F5 VH

Related Entries With Identical Sequence