SMTL ID : 7x2o.3 (3 other biounits)

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 2E6 (CVB1-M:2E6)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 13 residues within 4Å: Chain A: I.92, T.94, R.95, F.112, L.114, L.116, Y.143, P.165, I.180, I.183, Y.189, S.190, M.213 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.92, A:F.112, A:L.114, A:L.116, A:Y.143, A:Y.143, A:Y.143, A:I.180, A:Y.189 Hydrogen bonds: A:T.94 Salt bridges: A:R.95 PLM.2: 13 residues within 4Å: Chain G: I.92, T.94, R.95, F.112, L.114, L.116, Y.143, P.165, I.180, I.183, Y.189, S.190, M.213 11 PLIP interactions: 11 interactions with chain G Hydrophobic interactions: G:I.92, G:F.112, G:L.114, G:L.116, G:Y.143, G:Y.143, G:Y.143, G:I.180, G:Y.189 Hydrogen bonds: G:T.94 Salt bridges: G:R.95 PLM.3: 13 residues within 4Å: Chain M: I.92, T.94, R.95, F.112, L.114, L.116, Y.143, P.165, I.180, I.183, Y.189, S.190, M.213 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:I.92, M:F.112, M:L.114, M:L.116, M:Y.143, M:Y.143, M:Y.143, M:I.180, M:Y.189 Hydrogen bonds: M:T.94 Salt bridges: M:R.95 PLM.4: 13 residues within 4Å: Chain S: I.92, T.94, R.95, F.112, L.114, L.116, Y.143, P.165, I.180, I.183, Y.189, S.190, M.213 11 PLIP interactions: 11 interactions with chain S Hydrophobic interactions: S:I.92, S:F.112, S:L.114, S:L.116, S:Y.143, S:Y.143, S:Y.143, S:I.180, S:Y.189 Hydrogen bonds: S:T.94 Salt bridges: S:R.95 PLM.5: 13 residues within 4Å: Chain Y: I.92, T.94, R.95, F.112, L.114, L.116, Y.143, P.165, I.180, I.183, Y.189, S.190, M.213 11 PLIP interactions: 11 interactions with chain Y Hydrophobic interactions: Y:I.92, Y:F.112, Y:L.114, Y:L.116, Y:Y.143, Y:Y.143, Y:Y.143, Y:I.180, Y:Y.189 Hydrogen bonds: Y:T.94 Salt bridges: Y:R.95 PLM.6: 13 residues within 4Å: Chain 4: I.92, T.94, R.95, F.112, L.114, L.116, Y.143, P.165, I.180, I.183, Y.189, S.190, M.213 11 PLIP interactions: 11 interactions with chain 4 Hydrophobic interactions: 4:I.92, 4:F.112, 4:L.114, 4:L.116, 4:Y.143, 4:Y.143, 4:Y.143, 4:I.180, 4:Y.189 Hydrogen bonds: 4:T.94 Salt bridges: 4:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Q. et al., Structural basis for the synergistic neutralization of coxsackievirus B1 by a triple-antibody cocktail. Cell Host Microbe (2022)

Release Date

2022-09-28

Peptides

Virion protein 1: AGMSY4
VP2: BHNTZ5
VP3: CIOU06
Capsid protein VP4: DJPV17
2E6 light chain: EKQW28
2E6 heavy chain: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
A

M
A

S
A

Y
A

4
A

B
B

H
B

N
B

T
B

Z
B

5
B

C
C

I
C

O
C

U
C

0
C

6
C

D
D

J
D

P
D

V
D

1
D

7
D

E
L

K
L

Q
L

W
L

2
L

8
L

F
H

L
H

R
H

X
H

3
H

9
H

Virion protein 1

VP2

VP3

Capsid protein VP4

2E6 light chain

2E6 heavy chain

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