SMTL ID : 7x40.3 (3 other biounits)

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 8A10 (classified from CVB1 mature virion in complex with 8A10 and 2E6)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x PLM: PALMITIC ACID(Covalent)

PLM.1: 12 residues within 4Å: Chain C: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, Y.189, S.190, L.216 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:I.92, C:L.116, C:Y.143, C:Y.143, C:M.178, C:I.180, C:Y.189, C:Y.189 Hydrogen bonds: C:T.94 PLM.2: 12 residues within 4Å: Chain I: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, Y.189, S.190, L.216 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:I.92, I:L.116, I:Y.143, I:Y.143, I:M.178, I:I.180, I:Y.189, I:Y.189 Hydrogen bonds: I:T.94 PLM.3: 12 residues within 4Å: Chain O: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, Y.189, S.190, L.216 9 PLIP interactions: 9 interactions with chain O Hydrophobic interactions: O:I.92, O:L.116, O:Y.143, O:Y.143, O:M.178, O:I.180, O:Y.189, O:Y.189 Hydrogen bonds: O:T.94 PLM.4: 12 residues within 4Å: Chain U: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, Y.189, S.190, L.216 9 PLIP interactions: 9 interactions with chain U Hydrophobic interactions: U:I.92, U:L.116, U:Y.143, U:Y.143, U:M.178, U:I.180, U:Y.189, U:Y.189 Hydrogen bonds: U:T.94 PLM.5: 12 residues within 4Å: Chain 0: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, Y.189, S.190, L.216 9 PLIP interactions: 9 interactions with chain 0 Hydrophobic interactions: 0:I.92, 0:L.116, 0:Y.143, 0:Y.143, 0:M.178, 0:I.180, 0:Y.189, 0:Y.189 Hydrogen bonds: 0:T.94 PLM.6: 12 residues within 4Å: Chain 6: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, Y.189, S.190, L.216 9 PLIP interactions: 9 interactions with chain 6 Hydrophobic interactions: 6:I.92, 6:L.116, 6:Y.143, 6:Y.143, 6:M.178, 6:I.180, 6:Y.189, 6:Y.189 Hydrogen bonds: 6:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Q. et al., Structural basis for the synergistic neutralization of coxsackievirus B1 by a triple-antibody cocktail. Cell Host Microbe (2022)

Release Date

2022-09-28

Peptides

8A10 light chain: AGMSY4
8A10 heavy chain: BHNTZ5
Virion protein 1: CIOU06
VP2: DJPV17
VP3: EKQW28
Capsid protein VP4: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

G
L

M
L

S
L

Y
L

4
L

B
H

H
H

N
H

T
H

Z
H

5
H

C
A

I
A

O
A

U
A

0
A

6
A

D
B

J
B

P
B

V
B

1
B

7
B

E
C

K
C

Q
C

W
C

2
C

8
C

F
D

L
D

R
D

X
D

3
D

9
D

8A10 light chain

8A10 heavy chain

Virion protein 1

VP2

VP3

Capsid protein VP4

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