SMTL ID : 7x3d.3 (3 other biounits)

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 9A3 (CVB1-M:9A3)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-6-mer

Ligands

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 11 residues within 4Å: Chain A: I.92, T.94, F.112, L.116, I.141, Y.143, M.178, I.180, I.183, C.191, L.216 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.92, A:I.92, A:T.94, A:F.112, A:L.116, A:Y.143, A:Y.143, A:Y.143, A:I.180, A:I.183, A:L.216 PLM.2: 11 residues within 4Å: Chain G: I.92, T.94, F.112, L.116, I.141, Y.143, M.178, I.180, I.183, C.191, L.216 11 PLIP interactions: 11 interactions with chain G Hydrophobic interactions: G:I.92, G:I.92, G:T.94, G:F.112, G:L.116, G:Y.143, G:Y.143, G:Y.143, G:I.180, G:I.183, G:L.216 PLM.3: 11 residues within 4Å: Chain M: I.92, T.94, F.112, L.116, I.141, Y.143, M.178, I.180, I.183, C.191, L.216 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:I.92, M:I.92, M:T.94, M:F.112, M:L.116, M:Y.143, M:Y.143, M:Y.143, M:I.180, M:I.183, M:L.216 PLM.4: 11 residues within 4Å: Chain S: I.92, T.94, F.112, L.116, I.141, Y.143, M.178, I.180, I.183, C.191, L.216 11 PLIP interactions: 11 interactions with chain S Hydrophobic interactions: S:I.92, S:I.92, S:T.94, S:F.112, S:L.116, S:Y.143, S:Y.143, S:Y.143, S:I.180, S:I.183, S:L.216 PLM.5: 11 residues within 4Å: Chain Y: I.92, T.94, F.112, L.116, I.141, Y.143, M.178, I.180, I.183, C.191, L.216 11 PLIP interactions: 11 interactions with chain Y Hydrophobic interactions: Y:I.92, Y:I.92, Y:T.94, Y:F.112, Y:L.116, Y:Y.143, Y:Y.143, Y:Y.143, Y:I.180, Y:I.183, Y:L.216 PLM.6: 11 residues within 4Å: Chain 4: I.92, T.94, F.112, L.116, I.141, Y.143, M.178, I.180, I.183, C.191, L.216 11 PLIP interactions: 11 interactions with chain 4 Hydrophobic interactions: 4:I.92, 4:I.92, 4:T.94, 4:F.112, 4:L.116, 4:Y.143, 4:Y.143, 4:Y.143, 4:I.180, 4:I.183, 4:L.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Q. et al., Structural basis for the synergistic neutralization of coxsackievirus B1 by a triple-antibody cocktail. Cell Host Microbe (2022)

Release Date

2022-09-28

Peptides

Virion protein 1: AGMSY4
VP2: BHNTZ5
VP3: CIOU06
Capsid protein VP4: DJPV17
9A3 heavy chain: EKQW28
9A3 light chain: FLRX39

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
A

M
A

S
A

Y
A

4
A

B
B

H
B

N
B

T
B

Z
B

5
B

C
C

I
C

O
C

U
C

0
C

6
C

D
D

J
D

P
D

V
D

1
D

7
D

E
H

K
H

Q
H

W
H

2
H

8
H

F
L

L
L

R
L

X
L

3
L

9
L

Virion protein 1

VP2

VP3

Capsid protein VP4

9A3 heavy chain

9A3 light chain

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