SMTL ID : 7x2t.2 (3 other biounits)

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 8A10 (CVB1-M:8A10)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-5-5-mer

Ligands

5 x PLM: PALMITIC ACID(Covalent)

PLM.1: 10 residues within 4Å: Chain C: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, L.216 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.92, C:I.92, C:T.94, C:L.114, C:L.116, C:Y.143, C:Y.143, C:M.178, C:L.216 Hydrogen bonds: C:T.94 PLM.2: 10 residues within 4Å: Chain I: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, L.216 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.92, I:I.92, I:T.94, I:L.114, I:L.116, I:Y.143, I:Y.143, I:M.178, I:L.216 Hydrogen bonds: I:T.94 PLM.3: 10 residues within 4Å: Chain O: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, L.216 10 PLIP interactions: 10 interactions with chain O Hydrophobic interactions: O:I.92, O:I.92, O:T.94, O:L.114, O:L.116, O:Y.143, O:Y.143, O:M.178, O:L.216 Hydrogen bonds: O:T.94 PLM.4: 10 residues within 4Å: Chain U: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, L.216 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:I.92, U:I.92, U:T.94, U:L.114, U:L.116, U:Y.143, U:Y.143, U:M.178, U:L.216 Hydrogen bonds: U:T.94 PLM.5: 10 residues within 4Å: Chain 0: I.92, T.94, F.112, L.114, L.116, Y.143, M.178, I.180, I.183, L.216 10 PLIP interactions: 10 interactions with chain 0 Hydrophobic interactions: 0:I.92, 0:I.92, 0:T.94, 0:L.114, 0:L.116, 0:Y.143, 0:Y.143, 0:M.178, 0:L.216 Hydrogen bonds: 0:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Q. et al., Structural basis for the synergistic neutralization of coxsackievirus B1 by a triple-antibody cocktail. Cell Host Microbe (2022)

Release Date

2022-09-28

Peptides

8A10 light chain: AGMSY
8A10 heavy chain: BHNTZ
Virion protein 1: CIOU0
VP2: DJPV1
VP3: EKQW2
Capsid protein VP4: FLRX3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

G
L

M
L

S
L

Y
L

B
H

H
H

N
H

T
H

Z
H

C
A

I
A

O
A

U
A

0
A

D
B

J
B

P
B

V
B

1
B

E
C

K
C

Q
C

W
C

2
C

F
D

L
D

R
D

X
D

3
D

8A10 light chain

8A10 heavy chain

Virion protein 1

VP2

VP3

Capsid protein VP4

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