SMTL ID : 7emd.1

Mooring Stone-Like Arg114 Pulls Diverse Bulged Peptides: First Insight into African Swine Fever Virus-Derived T Cell Epitopes Presented by Swine Major Histocompatibility Complex Class I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- GLY- ASP- PHE- PHE- HIS- ASP- MET- VAL: TYR-GLY-ASP-PHE-PHE-HIS-ASP-MET-VAL(Non-covalent)

TYR-GLY-ASP-PHE-PHE-HIS-ASP-MET-VAL.1: 26 residues within 4Å: Chain A: Y.7, E.55, Y.59, E.63, K.66, T.73, Y.74, V.76, G.77, N.80, L.81, Y.84, Y.95, Y.99, R.114, Y.116, Y.123, T.143, K.146, W.147, R.155, R.156, Y.159, S.167, E.170, Y.171 40 PLIP interactions: 40 interactions with chain A Hydrophobic interactions: A:K.66, A:Y.74, A:L.81, A:Y.99, A:Y.123, A:T.143, A:R.155, A:Y.159 Hydrogen bonds: A:Y.7, A:E.63, A:K.66, A:T.73, A:Y.74, A:N.80, A:Y.84, A:Y.99, A:Y.99, A:T.143, A:R.156, A:R.156, A:Y.159, A:S.167, A:Y.171 Water bridges: A:Q.67, A:D.69, A:T.70, A:T.73, A:Y.95, A:R.114, A:R.114, A:R.114, A:R.114, A:Y.116, A:W.147 Salt bridges: A:R.114, A:R.114, A:K.146, A:R.156, A:R.156 pi-Stacking: A:Y.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, C. et al., Mooring Stone-Like Arg 114 Pulls Diverse Bulged Peptides: First Insight into African Swine Fever Virus-Derived T Cell Epitopes Presented by Swine Major Histocompatibility Complex Class I. J.Virol. (2022)

Release Date

2021-12-08

Peptides

Leucocyte antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Leucocyte antigen

Beta-2-microglobulin

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