SMTL ID : 7fff.1

Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-4-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain D: W.47, D.50, L.52, D.54, D.60, E.61 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:W.47, D:D.50, D:L.52, D:D.54, D:D.60 CA.2: 6 residues within 4Å: Chain H: W.47, D.50, L.52, D.54, D.60 Chain J: R.64 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:W.47, H:D.50, H:L.52, H:D.54, H:D.60 CA.3: 6 residues within 4Å: Chain N: W.47, D.50, L.52, D.54, D.60, E.61 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:W.47, N:D.50, N:L.52, N:D.60 CA.4: 7 residues within 4Å: Chain R: W.47, Q.48, D.50, L.52, D.54, D.60, E.61 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:W.47, R:D.50, R:L.52, R:D.54, R:D.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, B. et al., Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature (2021)

Release Date

2021-10-20

Peptides

Capsid protein: ABKL
Spike glycoprotein E1: CGMT
Low-density lipoprotein receptor class A domain-containing protein 3: DHNR
assembly protein E3: EIOQ
Spike glycoprotein E2: FJPS

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
S

K
A

L
F

C
G

G
B

M
C

T
O

D
H

H
D

N
E

R
M

E
I

I
T

O
P

Q
L

F
J

J
Q

P
R

S
N

Membrane

We predict this structure to be a membrane protein.
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Capsid protein

Spike glycoprotein E1

Low-density lipoprotein receptor class A domain-containing protein 3

assembly protein E3

Spike glycoprotein E2

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