SMTL ID : 7n1i.3 (2 other biounits)

CryoEM structure of Venezuelan equine encephalitis virus VLP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.134, T.136, S.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.136 NAG.2: 2 residues within 4Å: Chain B: S.284, N.318 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.284 NAG.3: 3 residues within 4Å: Chain D: N.134, T.136, S.141 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain E: S.284, N.318 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.284 NAG.5: 3 residues within 4Å: Chain G: N.134, T.136, S.141 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain H: S.284, N.318 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:S.284 NAG.7: 3 residues within 4Å: Chain J: N.134, T.136, S.141 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:T.136 NAG.8: 2 residues within 4Å: Chain K: S.284, N.318 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:S.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basore, K. et al., Structure of Venezuelan equine encephalitis virus in complex with the LDLRAD3 receptor. Nature (2021)

Release Date

2021-10-13

Peptides

E1 envelope glycoprotein: ADGJ
E2 envelope glycoprotein: BEHK
Capsid: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

D
C

G
B

J
A

B
H

E
G

H
F

K
E

C
L

F
K

I
J

L
I

E1 envelope glycoprotein

E2 envelope glycoprotein

Capsid

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