SMTL ID : 7sfu.1 (2 other biounits)

CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 2 residues within 4Å: Chain A: N.134, S.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.141 NAG.2: 2 residues within 4Å: Chain B: I.211, N.212 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: S.284, N.318 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.284, B:N.318 NAG.4: 2 residues within 4Å: Chain D: N.134, S.141 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.141 NAG.5: 1 residues within 4Å: Chain E: N.212 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain E: S.284, N.318 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.284, E:N.318 NAG.7: 2 residues within 4Å: Chain G: N.134, S.141 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:N.134, G:S.141 NAG.8: 1 residues within 4Å: Chain H: N.212 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain H: S.284, N.318 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:S.284, H:N.318, H:N.318 NAG.10: 2 residues within 4Å: Chain J: N.134, S.141 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:N.134 NAG.11: 2 residues within 4Å: Chain K: I.211, N.212 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.212 NAG.12: 2 residues within 4Å: Chain K: S.284, N.318 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:S.284, K:N.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kafai, N.M. et al., Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge. J.Exp.Med. (2022)

Release Date

2022-03-16

Peptides

Spike glycoprotein E1: ADGJ
Spike glycoprotein E2: BEHK
Capsid protein: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

Spike glycoprotein E1

Spike glycoprotein E2

Capsid protein

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