SMTL ID : 7ffl.1

Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain D: W.47, D.50, L.52, D.54, D.60 Chain L: R.64 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:W.47, D:D.50, D:L.52, D:D.54, D:D.60 CA.2: 6 residues within 4Å: Chain E: W.47, D.50, L.52, D.54, D.60, E.61 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:W.47, E:D.50, E:L.52, E:D.60 CA.3: 6 residues within 4Å: Chain H: W.47, D.50, L.52, D.54, D.60, E.61 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:W.47, H:D.50, H:L.52, H:D.54, H:D.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, B. et al., Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature (2021)

Release Date

2021-10-20

Peptides

Capsid protein: AFN
Spike glycoprotein E1: BCG
Low-density lipoprotein receptor class A domain-containing protein 3: DEH
assembly protein E3: IKO
Spike glycoprotein E2: JLM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
F

N
S

B
B

C
C

G
G

D
D

E
E

H
H

I
I

K
P

O
T

J
J

L
Q

M
R

Membrane

We predict this structure to be a membrane protein.
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Capsid protein

Spike glycoprotein E1

Low-density lipoprotein receptor class A domain-containing protein 3

assembly protein E3

Spike glycoprotein E2

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