SMTL ID : 7ffn.1

Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 5-fold axes

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain C: W.47, Q.48, D.50, L.52, D.54, D.60, E.61 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:W.47, C:D.50, C:L.52, C:D.54, C:D.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, B. et al., Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3. Nature (2021)

Release Date

2021-10-20

Peptides

Capsid protein: A
assembly protein E3: B
Low-density lipoprotein receptor class A domain-containing protein 3: C
Spike glycoprotein E2: D
Spike glycoprotein E1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

Membrane

We predict this structure to be a membrane protein.
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Capsid protein

assembly protein E3

Low-density lipoprotein receptor class A domain-containing protein 3

Spike glycoprotein E2

Spike glycoprotein E1

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