7g4e.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 7g4e.1

Crystal Structure of rat Autotaxin in complex with (5E)-5-[(4-tert-butylphenyl)methylidene]-2-pyrrolidin-1-yl-1,3-thiazol-4-one, i.e. SMILES N1=C(S/C(=C/c2ccc(C(C)(C)C)cc2)/C1=O)N1CCCC1 with IC50=0.210793 microM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-MAN-MAN-MAN.1:

12 residues within 4Å:

Chain A: L.193, E.196, S.197, G.228, H.406, N.409, N.410, P.495, N.496, N.497, L.718, H.804

No protein-ligand interaction detected (PLIP)

2 x Y0U: (5Z)-5-[(4-tert-butylphenyl)methylidene]-2-(pyrrolidin-1-yl)-1,3-thiazol-4(5H)-one(Non-covalent)

Y0U.2:	10 residues within 4Å: Chain A: I.140, F.183, L.186, A.190, F.246, F.247, W.248, A.277, Y.279 Ligands: Y0U.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.140, A:I.140, A:F.183, A:L.186, A:A.190, A:F.246, A:F.246, A:F.247, A:A.277, A:Y.279 Hydrogen bonds: A:W.248 pi-Stacking: A:Y.279
Y0U.3:	11 residues within 4Å: Chain A: F.183, L.186, Y.187, F.222, H.224, W.227, G.229, P.231, W.233, F.247 Ligands: Y0U.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.183, A:W.227, A:W.233, A:W.233, A:F.247 pi-Stacking: A:H.224, A:W.227, A:W.227

1 x ZN: ZINC ION(Non-covalent)

ZN.4:

3 residues within 4Å:

Chain A: D.284, H.288, H.447

5 PLIP interactions:

4 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:D.284, A:D.284, A:H.288, A:H.447, H₂O.14

1 x CA: CALCIUM ION(Non-covalent)

CA.5:

5 residues within 4Å:

Chain A: D.712, N.714, D.716, L.718, D.720

5 PLIP interactions:

4 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:D.712, A:D.716, A:L.718, A:D.720, H₂O.9

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6:

3 residues within 4Å:

Chain A: K.181, N.203, R.364

Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hunziker, D. et al., Crystal Structure of a rat Autotaxin complex. To be published

Release Date

2024-12-18

Peptides

Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2

Related Entries With Identical Sequence

5s9l.1 | 5s9m.1 | 5s9n.1 | 7g2e.1 | 7g2f.1 | 7g2g.1 | 7g2h.1 | 7g2i.1 | 7g2j.1 | 7g2k.1 | 7g2l.1 | 7g2m.1 | 7g2n.1 | 7g2o.1 | 7g2p.1 | 7g2q.1 | 7g2r.1 | 7g2s.1 | 7g2t.1 | 7g2u.1 | 7g2v.1 | 7g2w.1 | 7g2x.1 | 7g2y.1 | 7g2z.1 | 7g30.1 | 7g31.1 | 7g32.1 | 7g33.1 | 7g34.1 more...less...

7g35.1 | 7g36.1 | 7g37.1 | 7g38.1 | 7g39.1 | 7g3a.1 | 7g3b.1 | 7g3c.1 | 7g3d.1 | 7g3e.1 | 7g3f.1 | 7g3g.1 | 7g3h.1 | 7g3i.1 | 7g3j.1 | 7g3k.1 | 7g3l.1 | 7g3m.1 | 7g3n.1 | 7g3o.1 | 7g3p.1 | 7g3q.1 | 7g3r.1 | 7g3s.1 | 7g3t.1 | 7g3u.1 | 7g3v.1 | 7g3w.1 | 7g3x.1 | 7g3y.1 | 7g3z.1 | 7g40.1 | 7g41.1 | 7g42.1 | 7g43.1 | 7g44.1 | 7g45.1 | 7g46.1 | 7g47.1 | 7g48.1 | 7g49.1 | 7g4a.1 | 7g4b.1 | 7g4c.1 | 7g4d.1 | 7g4f.1 | 7g4g.1 | 7g4h.1 | 7g4i.1 | 7g4j.1 | 7g4k.1 | 7g4l.1 | 7g4m.1 | 7g4n.1 | 7g4o.1 | 7g4p.1 | 7g4q.1 | 7g4r.1 | 7g4s.1 | 7g4t.1 | 7g4u.1 | 7g4v.1 | 7g4w.1 | 7g4x.1 | 7g4y.1 | 7g4z.1 | 7g50.1 | 7g51.1 | 7g52.1 | 7g53.1 | 7g54.1 | 7g55.1 | 7g56.1 | 7g57.1 | 7g58.1 | 7g59.1 | 7g5a.1 | 7g5b.1 | 7g5c.1 | 7g5d.1 | 7g5e.1 | 7g5f.1 | 7g5g.1 | 7g5h.1 | 7g5i.1 | 7g5j.1 | 7g5k.1 | 7g5l.1 | 7g5m.1 | 7g5n.1 | 7g5o.1 | 7g5p.1 | 7g5q.1 | 7g5r.1 | 7g5s.1 | 7g5t.1 | 7g5u.1 | 7g5v.1 | 7g5w.1 | 7g5x.1 | 7g5y.1 | 7g5z.1 | 7g60.1 | 7g61.1 | 7g62.1 | 7g63.1 | 7g64.1 | 7g65.1 | 7g66.1 | 7g67.1 | 7g68.1 | 7g69.1 | 7g6a.1 | 7g6b.1 | 7g6c.1 | 7g6d.1 | 7g6e.1 | 7g6f.1 | 7g6g.1 | 7g6h.1 | 7g6i.1 | 7g6j.1 | 7g6k.1 | 7g6l.1 | 7g6m.1 | 7g6n.1 | 7g6o.1 | 7g6p.1 | 7g6q.1 | 7g6r.1 | 7g6s.1 | 7g6t.1 | 7g6u.1 | 7g6v.1 | 7g6w.1 | 7g6x.1 | 7g6y.1 | 7g6z.1 | 7g70.1 | 7g71.1 | 7g72.1 | 7g73.1 | 7g74.1 | 7g75.1 | 7g76.1 | 7g77.1 | 7g78.1 | 7g79.1 | 7g7a.1 | 7g7b.1 | 7g7c.1 | 7g7d.1 | 7g7e.1 | 7g7f.1 | 7g7g.1 | 7g7h.1 | 7g7i.1 | 7g7j.1 | 7g7k.1 | 7g7l.1 | 7g7m.1 | 7g7n.1 | 7g7o.1 | 7g7p.1 | 7g7q.1 | 7g7r.1 | 7g7s.1 | 7g7t.1 | 7g7u.1 | 7g7v.1 | 7g7w.1 | 7g7x.1 | 7g7y.1 | 7g7z.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top