SMTL ID : 7h1i.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z336080990

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-mer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.2: 5 residues within 4Å: Chain A: G.39, D.40 Chain B: H.42, D.66, N.143 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:D.66 Salt bridges: B:D.66, A:D.40

1 x VWJ: N-(propan-2-yl)-1H-benzimidazol-2-amine(Non-covalent)

VWJ.3: 10 residues within 4Å: Chain B: D.120, Y.121, P.122, A.123, S.126, Y.141, G.142, V.146, G.150, Y.152 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.141, B:V.146, B:Y.152 Hydrogen bonds: B:D.120 pi-Stacking: B:Y.152, B:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition of ZIKV NS2B-NS3 protease. To Be Published

Release Date

2024-05-08

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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