SMTL ID : 7h1k.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z57122377

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

9 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: D.32, V.33 Chain B: K.108, T.109, K.110 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:K.110 Hydrogen bonds: A:V.33 Salt bridges: A:D.32 DMS.2: 8 residues within 4Å: Chain B: Y.121, P.122, A.123, S.126, Y.141, G.142, Y.152 Ligands: DMS.4 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.3: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.4: 6 residues within 4Å: Chain B: G.142, N.143, G.144, Y.152 Ligands: DMS.2, DMS.7 No protein-ligand interaction detected (PLIP) DMS.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) DMS.7: 7 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, N.143 Ligands: DMS.4 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:D.40, B:D.66 Hydrogen bonds: B:H.42 Water bridges: B:D.66 DMS.8: 5 residues within 4Å: Chain B: I.114, I.156, T.157, Q.158 Ligands: DMS.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.158 DMS.9: 4 residues within 4Å: Chain B: D.81, D.132, K.133, C.134 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.133 Salt bridges: B:D.81, B:D.132 DMS.10: 5 residues within 4Å: Chain B: D.111, G.112, D.113, I.114 Ligands: DMS.8 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.109

1 x ELQ: [3,4-bis(fluoranyl)phenyl]-(4-methylpiperazin-1-yl)methanone(Non-covalent)

ELQ.5: 6 residues within 4Å: Chain B: Y.59, W.60, P.73, W.74, G.159, K.160 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.74 Hydrogen bonds: B:S.69, B:W.74 pi-Stacking: B:W.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition of ZIKV NS2B-NS3 protease. To Be Published

Release Date

2024-05-08

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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