SMTL ID : 7h1n.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with POB0120

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-mer

Ligands

6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: R.30 Chain B: K.108 No protein-ligand interaction detected (PLIP) DMS.2: 6 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, N.143 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:D.66, A:D.40 DMS.3: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.5: 4 residues within 4Å: Chain B: G.144, V.146, Y.152 Ligands: U4C.4 No protein-ligand interaction detected (PLIP) DMS.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) DMS.8: 3 residues within 4Å: Chain B: D.81, D.132, K.133 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.133 Salt bridges: B:D.81, B:D.132

1 x U4C: (2S)-1',4'-dihydro-2'H-spiro[pyrrolidine-2,3'-quinolin]-2'-one(Non-covalent)

U4C.4: 9 residues within 4Å: Chain B: D.120, Y.121, A.123, S.126, Y.141, G.142, Y.152 Ligands: DMS.5, W2M.6 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.152, B:Y.152 Hydrogen bonds: B:D.120

1 x W2M: (2R)-1',4'-dihydro-2'H-spiro[pyrrolidine-2,3'-quinolin]-2'-one(Non-covalent)

W2M.6: 5 residues within 4Å: Chain B: E.95, D.120, Y.121, P.122 Ligands: U4C.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.121, B:P.122 Hydrogen bonds: B:D.120, B:Y.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition of ZIKV NS2B-NS3 protease. To Be Published

Release Date

2024-05-08

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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