SMTL ID : 7h22.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z1102357527

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

2 x YX6: N-[(3R)-6-oxopiperidin-3-yl]-1,3-thiazole-4-carboxamide(Non-covalent)

YX6.1: 3 residues within 4Å: Chain A: E.37, S.38 Chain B: V.63 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.37 Hydrogen bonds: A:E.37, A:E.37 YX6.6: 10 residues within 4Å: Chain B: Y.121, P.122, A.123, T.125, S.126, Y.141, G.142, V.146, Y.152 Ligands: DMS.5 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.141, B:Y.152 Hydrogen bonds: B:G.142

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, N.143 Ligands: DMS.5 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:D.40, B:D.66 Hydrogen bonds: B:N.143 Water bridges: B:G.144 DMS.3: 2 residues within 4Å: Chain A: R.30 Chain B: K.108 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.108 DMS.4: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.5: 6 residues within 4Å: Chain B: G.142, N.143, G.144, Y.152 Ligands: DMS.2, YX6.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition of ZIKV NS2B-NS3 protease. To Be Published

Release Date

2024-05-08

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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