SMTL ID : 7h26.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z1198317053

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP)

1 x 01: (5-methyl-1H-pyrazolo[3,4-b]pyridin-1-yl)acetic acid

01.2: 7 residues within 4Å: Chain B: Y.121, P.122, A.123, S.126, Y.141, Y.152 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.141, B:Y.152 pi-Stacking: B:Y.152, B:Y.152

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain B: G.142, N.143, G.144, Y.152 Ligands: 01.2, SO4.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.144 Water bridges: B:N.143, B:G.144 SO4.4: 7 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, N.143 Ligands: SO4.3 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.143, A:S.38 Water bridges: B:D.66, B:D.66, B:G.144 Salt bridges: B:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition of ZIKV NS2B-NS3 protease. To Be Published

Release Date

2024-05-08

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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