SMTL ID : 7h2e.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z1428159350

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

hetero-1-1-mer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, N.143 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:F.41 Salt bridges: A:D.40, B:D.66 Hydrogen bonds: B:N.143 DMS.2: 6 residues within 4Å: Chain B: Y.121, P.122, A.123, Y.141, G.142, Y.152 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.3: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP)

2 x 01: (1S)-1-(1-phenyl-1H-1,2,3-triazol-4-yl)ethan-1-amine

01.4: 4 residues within 4Å: Chain B: E.95, D.120, Y.121, P.122 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.121, B:P.122 Hydrogen bonds: B:D.120 01.5: 7 residues within 4Å: Chain A: L.35, F.41 Chain B: Q.65, I.114, I.156, T.157, Q.158 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.35, A:F.41, B:I.114 Hydrogen bonds: B:Q.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition of ZIKV NS2B-NS3 protease. To Be Published

Release Date

2024-05-08

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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