SMTL ID : 7hot.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0014668-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

hetero-1-1-mer

Ligands

6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain B: Y.121, P.122, A.123, Y.141, Y.152 Ligands: DMS.3, 01.4 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.2: 4 residues within 4Å: Chain B: K.45, G.46, A.47 Ligands: SO4.5 No protein-ligand interaction detected (PLIP) DMS.3: 6 residues within 4Å: Chain B: G.142, N.143, G.144, Y.152 Ligands: DMS.1, 01.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144 DMS.6: 4 residues within 4Å: Chain A: G.26 Chain B: A.118, L.119, D.120 No protein-ligand interaction detected (PLIP) DMS.7: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.123 DMS.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x 01: N-(3-methylpyridin-4-yl)-3-(1,3-thiazol-2-yl)benzamide

01.4: 11 residues within 4Å: Chain A: D.40 Chain B: H.42, D.120, Y.121, A.123, S.126, G.142, N.143, Y.152 Ligands: DMS.1, DMS.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.121 pi-Stacking: B:H.42, B:Y.152

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain B: K.45, G.46, A.47 Ligands: DMS.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-02-26

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

Related Entries With Identical Sequence