SMTL ID : 7hp0.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0014812-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-mer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain B: Y.121, P.122, A.123, S.126, G.142, Y.152 Ligands: DMS.3, 01.4 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.2: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.3: 6 residues within 4Å: Chain B: G.142, N.143, G.144, Y.152 Ligands: DMS.1, 01.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144 DMS.5: 4 residues within 4Å: Chain B: D.132, K.133, C.134, R.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.133 Water bridges: B:D.81 Salt bridges: B:D.81, B:D.132 DMS.6: 3 residues within 4Å: Chain B: D.120, Y.121, P.122 No protein-ligand interaction detected (PLIP)

1 x 01: N-[2-(methanesulfonyl)-5-(piperazin-1-yl)phenyl]quinoline-5-carboxamide

01.4: 15 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, Y.121, P.122, A.123, S.126, G.142, N.143, V.146, Y.152 Ligands: DMS.1, DMS.3 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:H.42, B:V.146 Hydrogen bonds: B:S.126, B:S.126 pi-Stacking: B:H.42, B:Y.152, B:Y.152 Water bridges: A:S.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-02-26

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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