SMTL ID : 7hp4.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0014856-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

hetero-1-1-mer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: E.11 Chain B: R.15, G.94 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:R.15 Salt bridges: A:E.11 DMS.2: 5 residues within 4Å: Chain B: Y.121, A.123, Y.152 Ligands: DMS.4, 01.5 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.3: 4 residues within 4Å: Chain B: K.45, G.46, A.47 Ligands: SO4.6 No protein-ligand interaction detected (PLIP) DMS.4: 7 residues within 4Å: Chain B: H.42, G.142, N.143, G.144, Y.152 Ligands: DMS.2, 01.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144 DMS.7: 1 residues within 4Å: Ligands: 01.5 No protein-ligand interaction detected (PLIP)

1 x 01: (2M)-2-[6-(methylamino)pyridin-3-yl]-N-(1-methyl-1H-pyrazol-4-yl)benzamide

01.5: 10 residues within 4Å: Chain B: H.42, Y.121, A.123, S.126, G.142, N.143, Y.152 Ligands: DMS.2, DMS.4, DMS.7 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.123, B:Y.152, B:Y.152 Hydrogen bonds: B:S.126 pi-Stacking: B:H.42, B:Y.152

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain B: K.45, G.46, A.47 Ligands: DMS.3 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-02-26

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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