SMTL ID : 7hpc.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0015093-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.3: 4 residues within 4Å: Chain B: D.81, S.84, D.132, K.133 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.84, B:K.133 Salt bridges: B:D.81, B:D.132 DMS.5: 3 residues within 4Å: Chain B: S.84, E.85, K.133 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.85, B:K.133 Salt bridges: B:E.85 DMS.6: 4 residues within 4Å: Chain B: Q.33, G.135, R.136, V.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.33, B:V.137

1 x 01: 4-methyl-N-[(2-methyl-1H-imidazol-4-yl)methyl]-2-[(3S)-piperidin-3-yl]-1H-imidazole-5-carboxamide

01.2: 14 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, D.120, Y.121, P.122, A.123, S.126, Y.141, G.142, N.143, Y.152 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:H.42, B:Y.152 Hydrogen bonds: B:D.66, B:D.120, B:S.126, B:G.142 Water bridges: B:G.144 pi-Stacking: B:H.42, B:Y.152

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain B: R.96 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-02-26

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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