SMTL ID : 7hpd.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0015216-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: N-(5-carbamoyl-1H-pyrrol-3-yl)-2-[(propan-2-yl)amino]-1H-1,3-benzimidazole-6-carboxamide

01.1: 13 residues within 4Å: Chain A: G.39, D.40 Chain B: H.42, D.66, D.120, Y.121, A.123, S.126, G.142, N.143, V.146, G.150, Y.152 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.123, B:V.146, B:Y.152 Hydrogen bonds: B:D.120, B:G.142, B:N.143 Water bridges: B:A.123 pi-Stacking: B:H.42, B:Y.152, B:Y.152

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: M.8 Chain B: V.27, H.42, V.43, K.45 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: D.81, G.82, L.83 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.81 SO4.4: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-02-26

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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