SMTL ID : 7hpg.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0015487-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

hetero-1-1-mer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.5: 3 residues within 4Å: Chain B: S.84, E.85, K.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.85 Salt bridges: B:E.85 DMS.6: 4 residues within 4Å: Chain B: D.111, G.112, D.113, I.114 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.109

1 x 01: N-(3-methylpyridin-4-yl)-2-oxo-1-{[(3R)-pyrrolidin-3-yl]methyl}-1,2-dihydropyridine-3-carboxamide

01.2: 11 residues within 4Å: Chain A: G.39, D.40 Chain B: H.42, D.66, D.120, Y.121, S.126, Y.141, G.142, N.143, Y.152 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.42, B:D.66, B:D.120, B:Y.121 Water bridges: B:D.66 pi-Stacking: B:Y.152

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain B: D.81, S.84, E.85, D.132, K.133 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.84, B:E.85, B:K.133, B:C.134 Water bridges: B:D.81, B:D.132 Salt bridges: B:K.133 SO4.4: 1 residues within 4Å: Chain B: R.96 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-02-26

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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