SMTL ID : 7i1p.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with MFP-0011741-001-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: S.38, G.39, D.40 Chain B: H.42, D.66, N.143 Ligands: DMS.4, 01.5 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:D.66, A:F.41 Salt bridges: B:H.42

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain B: Y.121, P.122, A.123, Y.152 Ligands: DMS.4, 01.5 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.3: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.4: 8 residues within 4Å: Chain B: H.42, G.142, N.143, G.144, Y.152 Ligands: SO4.1, DMS.2, 01.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144 DMS.6: 3 residues within 4Å: Chain A: T.25 Chain B: L.119, D.120 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.120 DMS.7: 4 residues within 4Å: Chain B: D.132, K.133, C.134, R.136 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.133 Water bridges: B:S.84, B:D.132 Salt bridges: B:D.81, B:D.132

1 x 01: 2-[(2,8-dimethylquinolin-4-yl)oxy]acetamide

01.5: 14 residues within 4Å: Chain B: H.42, D.120, Y.121, P.122, A.123, S.126, Y.141, G.142, N.143, G.144, Y.152 Ligands: SO4.1, DMS.2, DMS.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.141, B:Y.152, B:Y.152, B:Y.152 Hydrogen bonds: B:N.143, B:G.144 Water bridges: B:H.42 pi-Stacking: B:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-03-05

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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