SMTL ID : 7i1z.1

PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with NegAcid1-Am02

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

hetero-1-1-mer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 8 residues within 4Å: Chain B: Y.121, A.123, S.126, Y.141, G.142, Y.152 Ligands: DMS.3, 01.4 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.152 DMS.2: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.3: 6 residues within 4Å: Chain B: G.142, N.143, G.144, Y.152 Ligands: DMS.1, 01.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144 DMS.5: 2 residues within 4Å: Chain B: P.122, A.123 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.123

1 x 01: [(3R)-3-aminopyrrolidin-1-yl](2-{[4-(hydroxymethyl)-2-methylquinolin-8-yl]methyl}phenyl)methanone

01.4: 13 residues within 4Å: Chain A: G.39, D.40 Chain B: H.42, D.66, D.120, Y.121, A.123, S.126, G.142, N.143, Y.152 Ligands: DMS.1, DMS.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:H.42, B:A.123 Hydrogen bonds: B:D.120, B:N.143 pi-Stacking: B:Y.152, B:Y.152 pi-Cation interactions: B:H.42, B:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., PanDDA analysis group deposition. To Be Published

Release Date

2025-03-05

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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