SMTL ID : 7jq3.1

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x VHP: N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide(Covalent)

VHP.1: 20 residues within 4Å: Chain A: H.41, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:H.41, A:H.164, A:M.165, A:E.166, A:P.168, A:P.168, A:D.187 Hydrogen bonds: A:F.140, A:G.143, A:C.145, A:H.164, A:E.166, A:E.166, A:E.166 VHP.2: 20 residues within 4Å: Chain B: H.41, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:H.41, B:H.164, B:M.165, B:E.166, B:P.168, B:P.168, B:D.187 Hydrogen bonds: B:F.140, B:G.143, B:C.145, B:H.164, B:E.166, B:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, K.S. et al., A Quick Route to Multiple Highly Potent SARS-CoV-2 Main Protease Inhibitors*. Chemmedchem (2021)

Release Date

2020-12-23

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

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