SMTL ID : 7ju5.1

Structure of RET protein tyrosine kinase in complex with pralsetinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x Q4J: Pralsetinib(Non-covalent)

Q4J.1: 20 residues within 4Å: Chain A: L.31, G.32, E.33, G.34, G.37, K.38, V.39, A.57, K.59, M.60, L.61, L.73, V.105, E.106, Y.107, A.108, K.109, G.111, R.179, L.182 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:V.39, A:V.105 Hydrogen bonds: A:E.33, A:E.106, A:A.108, A:A.108 pi-Cation interactions: A:K.59 Q4J.4: 20 residues within 4Å: Chain B: L.31, G.32, E.33, G.34, G.37, K.38, V.39, A.57, K.59, M.60, L.61, L.73, V.105, E.106, Y.107, A.108, G.111, R.179, L.182 Ligands: FMT.6 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.31, B:V.39, B:A.57, B:V.105, B:Y.107 Hydrogen bonds: B:E.33, B:E.106, B:A.108, B:A.108 pi-Cation interactions: B:K.59

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 7 residues within 4Å: Chain A: S.210, Q.211, G.212, S.223, H.227, Y.229 Chain B: P.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.212, A:Y.229 Water bridges: A:Y.229 FMT.3: 8 residues within 4Å: Chain A: G.1, P.2, L.3, S.4 Chain B: Q.211, L.224, F.225, H.227 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.1, A:L.3, A:S.4, B:Q.211, B:H.227 FMT.5: 8 residues within 4Å: Chain A: P.67 Chain B: S.210, Q.211, G.212, M.219, S.223, H.227, Y.229 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.212, B:Y.229 Water bridges: B:K.208, B:H.227 FMT.6: 5 residues within 4Å: Chain B: K.29, L.31, K.41, Y.107 Ligands: Q4J.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.29, B:K.41, B:Y.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subbiah, V. et al., Structural basis of acquired resistance to selpercatinib and pralsetinib mediated by non-gatekeeper RET mutations. Ann Oncol (2021)

Release Date

2020-11-11

Peptides

Proto-oncogene tyrosine-protein kinase receptor Ret: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proto-oncogene tyrosine-protein kinase receptor Ret

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