SMTL ID : 7ju6.1

Structure of RET protein tyrosine kinase in complex with selpercatinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x Q6G: Selpercatinib(Non-covalent)

Q6G.1: 19 residues within 4Å: Chain A: L.31, G.32, E.33, G.34, G.37, K.38, V.39, A.57, M.60, E.69, L.73, E.106, Y.107, A.108, K.109, Y.110, G.111, L.182, D.193 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.39, A:V.39, A:A.57, A:L.182, A:L.182 Hydrogen bonds: A:K.38, A:A.108 Water bridges: A:G.34, A:K.59 pi-Cation interactions: A:K.59 Q6G.6: 21 residues within 4Å: Chain B: L.31, G.32, E.33, G.34, G.37, K.38, V.39, A.57, K.59, M.60, L.61, E.69, D.72, L.73, E.106, Y.107, A.108, K.109, Y.110, G.111, L.182 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.39, B:V.39, B:A.57, B:L.182 Hydrogen bonds: B:K.38, B:A.108 pi-Cation interactions: B:K.59

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 9 residues within 4Å: Chain A: R.22, C.95, S.96, Q.97, G.99, P.100, L.102 Ligands: FMT.3, FMT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.22, A:Q.97 FMT.3: 7 residues within 4Å: Chain A: R.22, C.95, D.98, G.99, P.100 Ligands: FMT.2, FMT.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.98 FMT.4: 9 residues within 4Å: Chain A: R.22, C.95, S.96, Q.97, D.98, G.99, P.100 Ligands: FMT.2, FMT.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.97, A:D.98, A:P.100 Water bridges: A:R.22 FMT.5: 7 residues within 4Å: Chain A: R.174, L.196, R.198, K.208, G.212, R.213, I.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.198, A:K.208, A:R.213, A:R.213 FMT.7: 8 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227 Chain B: G.1, P.2, L.3, S.4 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.1, B:L.3, B:S.4, A:Q.211, A:Q.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subbiah, V. et al., Structural basis of acquired resistance to selpercatinib and pralsetinib mediated by non-gatekeeper RET mutations. Ann Oncol (2021)

Release Date

2020-11-11

Peptides

Proto-oncogene tyrosine-protein kinase receptor Ret: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proto-oncogene tyrosine-protein kinase receptor Ret

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