SMTL ID : 7k6r.1

Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to GSK4027

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 9ST: 4-bromo-2-methyl-5-[[(3~{R},5~{R})-1-methyl-5-phenyl-piperidin-3-yl]amino]pyridazin-3-one(Non-covalent)

9ST.1: 11 residues within 4Å: Chain A: W.36, P.37, F.38, P.41, V.42, D.46, A.47, Y.50, Y.92, N.93, F.99 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.36, A:W.36 Hydrogen bonds: A:P.37, A:N.93 Salt bridges: A:D.46 pi-Stacking: A:F.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: V.53, I.54, K.55, Y.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.53, A:K.55 Water bridges: A:E.56 EDO.3: 2 residues within 4Å: Chain A: M.8, T.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ycas, P.D. et al., New inhibitors for the BPTF bromodomain enabled by structural biology and biophysical assay development. Org.Biomol.Chem. (2020)

Release Date

2020-12-09

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF

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