SMTL ID : 7kdw.1 (1 other biounit)

Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to Compound 6 (HZ01052)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x WCV: cyclopropyl[7-({2-[(prop-2-yn-1-yl)amino]pyrimidin-4-yl}amino)-3,4-dihydroquinolin-1(2H)-yl]methanone(Non-covalent)

WCV.1: 11 residues within 4Å: Chain A: W.36, P.37, F.38, V.42, D.46, A.47, Y.50, C.89, Y.92, N.93, F.99 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.36, A:P.37, A:F.38, A:F.38, A:D.46, A:A.47, A:Y.92, A:F.99, A:F.99, A:F.99 Hydrogen bonds: A:P.37, A:N.93 Water bridges: A:D.43, A:D.43

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.23, Q.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.23, A:Q.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ycas, P.D. et al., New inhibitors for the BPTF bromodomain enabled by structural biology and biophysical assay development. Organic and Biomolecular Chemistry (2020)

Release Date

2020-12-09

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF

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