SMTL ID : 8ou2.2 (1 other biounit)

Crystal structure of the bromodomain of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to a potent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: V.111 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: V.53, I.54, K.55, Y.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.53, A:K.55 Water bridges: A:E.56 EDO.4: 4 residues within 4Å: Chain A: K.23, Q.68, R.70 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.23, A:R.70, A:R.70 EDO.5: 5 residues within 4Å: Chain A: K.23, L.26, E.64, Q.68 Ligands: EDO.4 No protein-ligand interaction detected (PLIP)

1 x W2W: 7-(1-cyclopropylpyrazol-4-yl)-2-[[2-fluoranyl-4-(4-methylpiperazin-1-yl)sulfonyl-phenyl]amino]-3-methyl-pyrido[1,2-a]pyrimidin-4-one

W2W.2: 12 residues within 4Å: Chain A: W.36, P.37, F.38, E.40, P.41, V.42, D.43, D.46, A.47, Y.92, N.93, F.99 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.36, A:F.38, A:E.40, A:V.42, A:D.46, A:A.47 Hydrogen bonds: A:P.37, A:N.93 Water bridges: A:D.43, A:D.46 Salt bridges: A:E.40, A:D.43, A:D.46, A:D.46 pi-Stacking: A:F.99, A:F.99

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 5 residues within 4Å: Chain A: L.14, T.15, E.16, Y.19, R.70 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balikci, E. et al., Crystal structure of the bromodomain of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to a potent inhibitor. To Be Published

Release Date

2024-05-01

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nucleosome-remodeling factor subunit BPTF

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