SMTL ID : 7lro.1 (1 other biounit)

Crystal structure of BPTF bromodomain in complex with inhibitor HZ-01-105

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: K.23, R.27 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.23, A:R.27

1 x YBV: 5-(azetidin-3-ylamino)-4-chloranyl-2-methyl-pyridazin-3-one(Non-covalent)

YBV.2: 11 residues within 4Å: Chain A: P.37, F.38, E.40, P.41, V.42, D.46, A.47, C.89, Y.92, N.93, F.99 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.37, A:N.93 Water bridges: A:W.36, A:E.40, A:D.43 pi-Stacking: A:F.99

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: V.53, I.54, K.55, Y.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.53, A:K.55 Water bridges: A:E.56 EDO.4: 5 residues within 4Å: Chain A: P.44, D.49, Y.50, Y.51, G.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.51, A:G.52 Water bridges: A:D.49 EDO.5: 2 residues within 4Å: Chain A: P.41, Y.51 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.57, A:D.59 EDO.6: 4 residues within 4Å: Chain A: R.90, E.104, E.107, S.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.107 Water bridges: A:R.90 EDO.7: 5 residues within 4Å: Chain A: K.23, R.27, E.64, Q.68 Ligands: DMS.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zahid, H. et al., New Design Rules for Developing Potent Cell-Active Inhibitors of the Nucleosome Remodeling Factor (NURF) via BPTF Bromodomain Inhibition. J.Med.Chem. (2021)

Release Date

2022-08-10

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF

Related Entries With Identical Sequence