SMTL ID : 7kcu.1 (1 other biounit)

Joint neutron/X-ray structure of Oxyferrous Dehaloperoxidase B

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: F.24, E.31, N.34, F.35, H.55, K.58, V.59, L.62, M.63, L.83, M.86, Q.88, H.89, L.92, N.96, F.97, L.100, F.101, L.127 Ligands: OXY.2 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:F.24, A:F.35, A:V.59, A:V.59, A:L.62, A:L.62, A:L.83, A:L.92, A:N.96, A:F.97, A:L.127 Salt bridges: A:H.55, A:H.55 Metal complexes: A:H.89

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 5 residues within 4Å: Chain A: F.21, F.35, H.55, V.59 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.55

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.1, F.2, K.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.2, A:K.3, A:K.3 Water bridges: A:G.1, A:Q.4, A:S.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moreno-Chicano, T. et al., Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature. Iucrj (2022)

Release Date

2021-10-13

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase B

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