SMTL ID : 7sje.1 (1 other biounit)

Crystal structure of dehaloperoxidase B in complex with p-cymene

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: F.24, E.31, N.34, F.35, H.55, K.58, V.59, L.62, M.63, L.83, M.86, Q.88, H.89, L.92, N.96, F.97 Ligands: MML.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.24, A:F.35, A:F.35, A:F.35, A:K.58, A:V.59, A:V.59, A:L.62, A:L.83, A:L.92, A:N.96, A:F.97 Salt bridges: A:H.55, A:H.55, A:K.58 pi-Stacking: A:H.89 Metal complexes: A:H.89

1 x MML: 1-methyl-4-(1-methylethyl)benzene(Covalent)

MML.2: 9 residues within 4Å: Chain A: F.21, F.35, Y.38, K.51, F.52, H.55, T.56, V.59 Ligands: HEM.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.21, A:F.35, A:Y.38, A:F.52, A:F.52, A:H.55, A:T.56, A:V.59

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: G.1, F.2, K.3, D.116 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:F.2, A:K.3 Water bridges: A:Q.4, A:S.119, A:S.119, A:S.119 SO4.4: 2 residues within 4Å: Chain A: V.39, G.40 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.40 Water bridges: A:K.32, A:K.32, A:K.41 Salt bridges: A:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malewschick, T. et al., The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes. To Be Published

Release Date

2022-11-23

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase B

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