SMTL ID : 7lzn.1 (1 other biounit)

DHP B in complex with 2,4-Dichlorophenol substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: F.24, E.31, N.34, F.35, H.55, K.58, V.59, L.62, M.63, L.83, Q.88, H.89, L.92, N.96, F.97, L.100, L.127 Ligands: 5JC.3 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:F.24, A:F.35, A:V.59, A:L.62, A:L.62, A:M.63, A:L.83, A:Q.88, A:L.92, A:N.96, A:F.97, A:L.100, A:L.127 Hydrogen bonds: A:Q.88, A:Q.88 Salt bridges: A:H.55, A:H.55, A:K.58 Metal complexes: A:H.89

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.32, V.39, G.40 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.40 Water bridges: A:K.32, A:K.32, A:K.32 Salt bridges: A:K.32

1 x 5JC: 2,4-dichlorophenol(Non-covalent)

5JC.3: 6 residues within 4Å: Chain A: F.21, F.35, H.55, T.56, V.59 Ligands: HEM.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.35, A:T.56, A:V.59 Water bridges: A:H.55 pi-Stacking: A:F.21

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: T.93, G.95, K.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.93, A:G.95, A:K.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carey, L.M. et al., Mechanistic and Structural Studies of 2,4-dihalophenol: Bridging the Functional Gap between Reactivity and Inhibition in Dehaloperoxidase. To Be Published

Release Date

2022-03-16

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase B

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