SMTL ID : 7sjd.1 (1 other biounit)

Crystal structure of dehaloperoxidase B in complex with terpinolene

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: F.24, E.31, N.34, F.35, H.55, K.58, V.59, L.62, M.63, L.83, M.86, Q.88, H.89, L.92, N.96, F.97, L.127 Ligands: 9LR.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:F.24, A:F.35, A:K.58, A:V.59, A:L.62, A:L.62, A:L.83, A:Q.88, A:L.92, A:N.96, A:F.97, A:L.127 Salt bridges: A:H.55, A:H.55, A:K.58 Metal complexes: A:H.89

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.10, E.65, D.68, R.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.10, A:R.10, A:D.68, A:R.69

1 x 9LR: 1-methyl-4-(propan-2-ylidene)cyclohex-1-ene(Non-covalent)

9LR.3: 8 residues within 4Å: Chain A: F.21, F.35, Y.38, F.52, H.55, T.56, V.59 Ligands: HEM.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.35, A:Y.38, A:F.52, A:F.52, A:H.55, A:T.56, A:V.59

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: G.1, F.2, K.3, D.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.1, A:F.2, A:K.3 Water bridges: A:Q.4 SO4.5: 3 residues within 4Å: Chain A: K.32, V.39, G.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.40 Salt bridges: A:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malewschick, T. et al., The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes. To Be Published

Release Date

2022-11-23

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase B

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