SMTL ID : 7sjf.2 (1 other biounit)

Structure of Dehaloperoxidase B in Complex with Thymol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: F.24, E.31, N.34, F.35, H.55, K.58, V.59, L.62, M.63, L.83, M.86, Q.88, H.89, L.92, N.96, F.97, L.127 Ligands: IPB.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.24, A:N.34, A:F.35, A:F.35, A:V.59, A:L.62, A:L.83, A:Q.88, A:Q.88, A:L.92, A:N.96, A:F.97, A:F.97, A:L.127 Hydrogen bonds: A:Q.88 Salt bridges: A:H.55, A:K.58 Metal complexes: A:H.89

1 x IPB: 5-METHYL-2-(1-METHYLETHYL)PHENOL(Non-covalent)

IPB.2: 9 residues within 4Å: Chain A: F.21, F.35, Y.38, K.51, F.52, H.55, T.56, V.59 Ligands: HEM.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.21, A:F.35, A:Y.38, A:F.52, A:F.52, A:H.55, A:V.59 Hydrogen bonds: A:Y.38, A:H.55 pi-Stacking: A:F.35

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: G.1, F.2, K.3, D.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.2, A:K.3, A:D.116 Water bridges: A:S.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malewschick, T. et al., The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes. To Be Published

Release Date

2022-11-23

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dehaloperoxidase B

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