SMTL ID : 7kg0.1

Structure of human PARG complexed with PARG-131

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x WDA: 5-({4-[(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)methyl]phenyl}methyl)pyrimidine-2,4,6(1H,3H,5H)-trione(Non-covalent)

WDA.1: 8 residues within 4Å: Chain A: F.293, V.308, Q.309, Y.347, Y.350, A.351, E.352, F.457 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.350 Hydrogen bonds: A:E.352 Water bridges: A:A.429 pi-Stacking: A:Y.350, A:Y.350, A:F.457

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: E.264, R.265, C.266, E.267, T.479, G.481, D.482, K.485 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.479, A:K.485, A:K.485

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.90, Y.119, P.198, R.199, N.201 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.199, A:N.201 Water bridges: A:R.90, A:R.90, A:R.90 Salt bridges: A:R.90, A:R.199 SO4.4: 4 residues within 4Å: Chain A: F.235, C.236, W.356 Ligands: SO4.5 No protein-ligand interaction detected (PLIP) SO4.5: 5 residues within 4Å: Chain A: L.136, E.140, L.144, I.148 Ligands: SO4.4 No protein-ligand interaction detected (PLIP) SO4.6: 3 residues within 4Å: Chain A: D.62, N.63, K.64 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosey, C.A. et al., Targeting SARS-CoV-2 Nsp3 macrodomain structure with insights from human poly(ADP-ribose) glycohydrolase (PARG) structures with inhibitors. Prog.Biophys.Mol.Biol. (2021)

Release Date

2021-03-10

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

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