SMTL ID : 7kq6.1 (2 other biounits)

Crystal Structure of Acetyl-coenzyme A synthetase from Coccidioides immitis in complex with PRX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PRX: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER(Non-covalent)

PRX.1: 17 residues within 4Å: Chain A: I.342, T.343, V.417, G.418, E.419, P.420, D.442, T.443, Y.444, W.445, Q.446, T.447, D.533, I.545, R.548, N.554, R.559 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.342, A:V.417, A:W.445 Hydrogen bonds: A:G.418, A:T.443, A:W.445, A:Q.446, A:T.447, A:T.447, A:D.533, A:R.548, A:N.554 Water bridges: A:I.421, A:T.447 Salt bridges: A:R.559 pi-Stacking: A:Y.444, A:Y.444

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.44, S.54, G.55, G.459 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.44, A:Y.44 Water bridges: A:S.54, A:M.56 EDO.3: 5 residues within 4Å: Chain A: L.62, R.76, M.77, D.80, Y.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.76, A:D.80 EDO.4: 6 residues within 4Å: Chain A: D.80, L.81, R.118, H.119, L.354, L.355 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.119, A:L.355 EDO.5: 4 residues within 4Å: Chain A: H.119, K.126, P.329, G.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.119, A:G.356 EDO.6: 4 residues within 4Å: Chain A: R.140, I.142, E.150, F.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.140 Water bridges: A:E.146, A:E.178, A:E.178 EDO.7: 7 residues within 4Å: Chain A: Y.131, R.140, I.176, P.177, E.178, F.252, R.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:E.178 EDO.8: 4 residues within 4Å: Chain A: T.509, V.510, W.511, G.512 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.510, A:G.512 Water bridges: A:R.213, A:D.513 EDO.9: 2 residues within 4Å: Chain A: G.264, L.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.264 Water bridges: A:G.264, A:E.271, A:E.272 EDO.10: 2 residues within 4Å: Chain A: K.86, D.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeBouver, N.D. et al., Crystal Structure of Acetyl-coenzyme A synthetase synthetase from Coccidioides immitis in complex with PRX. to be published

Release Date

2020-12-09

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyl-coenzyme A synthetase

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