SMTL ID : 7l3p.1

Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-ethylphosphate and Co-enzyme A from Coccidioides immitis RS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x WTA: 5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine(Non-covalent)

WTA.1: 15 residues within 4Å: Chain A: I.342, G.418, E.419, P.420, D.442, T.443, Y.444, W.445, Q.446, T.447, D.533, I.545, R.548, N.554, R.559 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.418, A:T.443, A:W.445, A:Q.446, A:T.447, A:T.447, A:D.533, A:R.548 Water bridges: A:I.342, A:I.342, A:I.421, A:T.447 Salt bridges: A:R.559 pi-Stacking: A:Y.444, A:Y.444

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.86, D.89, G.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.86 EDO.3: 5 residues within 4Å: Chain A: L.81, R.118, H.119, L.354, L.355 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: H.119, K.126, G.356 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: R.140, I.142, E.150, F.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140 Water bridges: A:E.146, A:E.178 EDO.6: 7 residues within 4Å: Chain A: Y.131, R.140, I.176, P.177, E.178, F.252, R.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:E.178 EDO.7: 3 residues within 4Å: Chain A: D.376, E.379, K.380 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.376, A:K.380 Water bridges: A:K.382 EDO.8: 6 residues within 4Å: Chain A: A.75, R.79, F.88, D.89, K.90, T.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.79, A:R.79, A:F.88 EDO.9: 3 residues within 4Å: Chain A: W.156, Y.276, P.277 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 6 residues within 4Å: Chain A: G.298, S.299, T.300, K.304, R.516, T.520 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.299, A:T.300, A:T.520 Salt bridges: A:K.304, A:R.516

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fox III, D. et al., Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-methylphosphate from Coccidioides immitis RS. to be published

Release Date

2020-12-30

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyl-coenzyme A synthetase

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