SMTL ID : 7kq6.2 (2 other biounits)

Crystal Structure of Acetyl-coenzyme A synthetase from Coccidioides immitis in complex with PRX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PRX: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER(Non-covalent)

PRX.1: 16 residues within 4Å: Chain A: I.342, T.343, V.417, G.418, E.419, P.420, D.442, T.443, Y.444, W.445, Q.446, T.447, D.533, I.545, R.548, R.559 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.342, A:V.417, A:W.445 Hydrogen bonds: A:G.418, A:T.443, A:W.445, A:Q.446, A:T.447, A:T.447, A:D.533, A:R.548 Water bridges: A:T.447 Salt bridges: A:R.559 pi-Stacking: A:Y.444, A:Y.444

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.44, S.54, G.55, I.460 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: L.62, R.76, M.77, D.80, Y.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.76, A:D.80 EDO.4: 4 residues within 4Å: Chain A: H.119, K.126, P.329, G.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.119, A:G.356 EDO.5: 7 residues within 4Å: Chain A: Y.131, R.140, I.176, P.177, E.178, F.252, R.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:E.178 EDO.6: 7 residues within 4Å: Chain A: E.132, P.136, G.137, R.373, D.376, V.377, K.380 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.137, A:R.373, A:K.380, A:K.380 Water bridges: A:H.138, A:D.376 EDO.7: 4 residues within 4Å: Chain A: R.140, I.142, E.150, F.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.140 Water bridges: A:R.140, A:E.146, A:E.178, A:E.178 EDO.8: 6 residues within 4Å: Chain A: G.166, D.167, T.168, A.212, R.213, W.511 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.167, A:T.168 Water bridges: A:G.166, A:R.213, A:R.213 EDO.9: 3 residues within 4Å: Chain A: T.509, W.511, G.512 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.510, A:G.512 Water bridges: A:R.213, A:W.511, A:D.513 EDO.10: 5 residues within 4Å: Chain A: D.237, L.240, K.241, T.262, R.265 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.237, A:T.262, A:R.265, A:R.265 Water bridges: A:T.262 EDO.11: 5 residues within 4Å: Chain A: A.257, D.258, V.259, W.261, W.268 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.257, A:D.258, A:V.259 Water bridges: A:W.261 EDO.12: 6 residues within 4Å: Chain A: D.71, A.75, R.79, F.88, K.90, T.91 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.71, A:D.71, A:R.79, A:R.79, A:T.91 EDO.13: 3 residues within 4Å: Chain A: K.86, D.89, G.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.86 EDO.14: 1 residues within 4Å: Chain A: D.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeBouver, N.D. et al., Crystal Structure of Acetyl-coenzyme A synthetase synthetase from Coccidioides immitis in complex with PRX. to be published

Release Date

2020-12-09

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acetyl-coenzyme A synthetase

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