SMTL ID : 7l3q.2 (2 other biounits)

Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-methylphosphate and Co-enzyme A from Coccidioides immitis RS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Y.131, R.140, I.176, P.177, E.178, F.252, R.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:E.178 EDO.2: 4 residues within 4Å: Chain A: R.140, I.142, E.150, F.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.140 Water bridges: A:E.178 EDO.3: 4 residues within 4Å: Chain A: T.509, V.510, W.511, G.512 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.510, A:G.512 Water bridges: A:R.213 EDO.4: 4 residues within 4Å: Chain A: H.119, D.123, K.126, G.356 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.356 EDO.5: 3 residues within 4Å: Chain A: L.81, R.118, L.354 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: K.86, D.89, G.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.86, A:D.89

1 x COA: COENZYME A(Non-covalent)

COA.6: 21 residues within 4Å: Chain A: F.197, A.198, G.199, R.225, I.230, C.335, G.336, G.337, D.338, T.343, P.366, Y.387, V.388, A.389, V.417, S.556, G.557, H.558, R.617, P.622, F.623 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.366 Hydrogen bonds: A:D.338, A:S.556, A:S.556, A:S.556 Water bridges: A:R.225, A:K.228, A:K.228, A:K.228, A:K.228, A:F.623 Salt bridges: A:R.225, A:R.617

1 x XM7: 5'-O-[(R)-hydroxy(methoxy)phosphoryl]adenosine(Non-covalent)

XM7.7: 15 residues within 4Å: Chain A: I.342, G.418, E.419, P.420, D.442, T.443, Y.444, W.445, Q.446, T.447, D.533, I.545, R.548, N.554, R.559 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.418, A:T.443, A:W.445, A:Q.446, A:T.447, A:D.533, A:R.548, A:N.554 Salt bridges: A:R.559 pi-Stacking: A:Y.444, A:Y.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fox III, D. et al., Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-methylphosphate and Co-enzyme A from Coccidioides immitis RS. to be published

Release Date

2020-12-30

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acetyl-coenzyme A synthetase

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