SMTL ID : 7kvy.1

Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-ethylphosphate and Co-enzyme A from Coccidioides immitis RS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 20 residues within 4Å: Chain A: F.197, A.198, G.199, R.225, C.335, G.337, D.338, T.343, P.366, Y.387, V.388, A.389, T.391, V.417, S.556, G.557, H.558, R.617, P.622, F.623 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.366, A:T.391 Hydrogen bonds: A:D.338, A:S.556, A:S.556 Water bridges: A:R.225, A:R.225, A:G.336, A:F.623 Salt bridges: A:R.225, A:R.617

1 x WTA: 5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine(Non-covalent)

WTA.2: 17 residues within 4Å: Chain A: I.342, T.343, V.417, G.418, E.419, P.420, D.442, T.443, Y.444, W.445, Q.446, T.447, D.533, I.545, R.548, N.554, R.559 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.342, A:T.343, A:V.417, A:W.445 Hydrogen bonds: A:G.418, A:T.443, A:W.445, A:Q.446, A:T.447, A:T.447, A:D.533, A:R.548 Water bridges: A:I.342, A:I.421, A:T.447, A:T.447, A:R.559 Salt bridges: A:R.559 pi-Stacking: A:Y.444, A:Y.444

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: K.86, D.89, G.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.86 EDO.4: 6 residues within 4Å: Chain A: D.80, L.81, R.118, H.119, L.354, L.355 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: R.140, I.142, E.150, F.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.140 Water bridges: A:E.146, A:E.178, A:E.178 EDO.6: 3 residues within 4Å: Chain A: R.76, M.77, D.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.76 Water bridges: A:Y.323 EDO.7: 6 residues within 4Å: Chain A: K.159, R.188, I.189, L.280, P.281, E.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.159, A:I.189 EDO.8: 7 residues within 4Å: Chain A: Y.131, R.140, I.176, P.177, E.178, F.252, R.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.140, A:R.140, A:E.178 EDO.9: 2 residues within 4Å: Chain A: G.98, D.100 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.95 EDO.10: 5 residues within 4Å: Chain A: A.257, D.258, V.259, W.261, W.268 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.257, A:V.259, A:W.268 Water bridges: A:K.253, A:K.253 EDO.11: 4 residues within 4Å: Chain A: T.509, V.510, W.511, G.512 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.510, A:G.512 Water bridges: A:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fox III, D. et al., Crystal Structure of Acetyl-CoA synthetase in complex with adenosine-5'-ethylphosphate and Co-enzyme A from Coccidioides immitis RS. to be published

Release Date

2020-12-30

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyl-coenzyme A synthetase

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