SMTL ID : 7kso.1

Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.299, C.302, C.307, L.309, H.310 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.302, A:C.307, A:H.310 ZN.2: 7 residues within 4Å: Chain A: C.531, C.544, C.550, C.554, R.557 Ligands: ZN.3, ZN.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.531, A:C.544, A:C.550 ZN.3: 8 residues within 4Å: Chain A: H.526, C.531, C.535, C.537, C.544, N.556 Ligands: ZN.2, ZN.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.531, A:C.544 ZN.4: 8 residues within 4Å: Chain A: C.524, H.526, C.535, C.537, C.544, C.548 Ligands: ZN.2, ZN.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.524, A:C.548 ZN.5: 6 residues within 4Å: Chain A: C.561, C.581, C.586, C.589 Ligands: ZN.6, ZN.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.561, A:C.581, A:C.589 ZN.6: 6 residues within 4Å: Chain A: C.561, C.567, C.572, C.581 Ligands: ZN.5, ZN.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.561, A:C.567, A:C.572 ZN.7: 7 residues within 4Å: Chain A: C.561, C.567, C.581, C.589, C.602 Ligands: ZN.5, ZN.6 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.567 ZN.8: 4 residues within 4Å: Chain C: W.452, C.453, H.466, H.471 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.471

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grau, D. et al., Structures of monomeric and dimeric PRC2:EZH1 reveal flexible modules involved in chromatin compaction. Nat Commun (2021)

Release Date

2021-02-03

Peptides

Histone-lysine N-methyltransferase EZH1: A
Polycomb protein EED: B
Polycomb protein SUZ12: C
Histone-binding protein RBBP4: D
Zinc finger protein AEBP2: E
Protein Jumonji: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Histone-lysine N-methyltransferase EZH1

Polycomb protein EED

Polycomb protein SUZ12

Histone-binding protein RBBP4

Zinc finger protein AEBP2

Protein Jumonji

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