SMTL ID : 7ksr.1

PRC2:EZH1_A from a dimeric PRC2 bound to a nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.299, C.302, K.304, C.307, H.310 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.299, A:C.302, A:C.307 ZN.2: 5 residues within 4Å: Chain A: C.531, C.544, C.550 Ligands: ZN.3, ZN.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.531, A:C.550 ZN.3: 10 residues within 4Å: Chain A: C.524, H.526, C.531, C.535, C.537, C.544, C.548, N.556 Ligands: ZN.2, ZN.4 No protein-ligand interaction detected (PLIP) ZN.4: 6 residues within 4Å: Chain A: C.524, H.526, C.548, C.550 Ligands: ZN.2, ZN.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.524, A:C.548 ZN.5: 6 residues within 4Å: Chain A: C.581, D.582, C.586, C.589 Ligands: ZN.6, ZN.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.581, A:C.589 ZN.6: 7 residues within 4Å: Chain A: C.561, C.567, C.572, C.574, C.581 Ligands: ZN.5, ZN.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.561, A:C.581 ZN.7: 6 residues within 4Å: Chain A: C.567, C.581, C.589, C.602 Ligands: ZN.5, ZN.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.581, A:C.589, A:C.602

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grau, D. et al., Structures of monomeric and dimeric PRC2:EZH1 reveal flexible modules involved in chromatin compaction. Nat Commun (2021)

Release Date

2021-02-03

Peptides

Histone-lysine N-methyltransferase EZH1: A
Histone-binding protein RBBP4: B
Polycomb protein SUZ12: C
Polycomb protein EED: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
C

D
B

Histone-lysine N-methyltransferase EZH1

Histone-binding protein RBBP4

Polycomb protein SUZ12

Polycomb protein EED

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