SMTL ID : 7lx3.1

Cryo-EM structure of EDC-crosslinked ConSOSL.UFO.664 (ConS-EDC) in complex with bNAb PGT122

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-mer
Ligands
33 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Martin, G.M. et al., Profound structural conservation of chemically cross-linked HIV-1 envelope glycoprotein experimental vaccine antigens. Npj Vaccines (2023)
Release Date
2022-03-09
Peptides
Env glycoprotein gp160: ADG
PGT122 Fab light chain: BEH
PGT122 Fab heavy chain: CFI
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
D
B
G
C
B
L
E
M
H
O
C
H
F
N
I
P

Env glycoprotein gp160

Toggle Identical (ADG)

PGT122 Fab light chain

Toggle Identical (BEH)

PGT122 Fab heavy chain

Toggle Identical (CFI)

Related Entries With Identical Sequence

4jy5.1 | 4nco.1 | 4tvp.1 | 5fyj.1 | 5fyk.1 | 5fyl.1 | 5i8h.1 | 5i8h.2 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 6b0n.1 | 6de7.1 | 6nf2.1 | 6osy.1 | 6ot1.1 | 7lx2.1 | 7lxm.1 | 7lxn.1