SMTL ID : 6ot1.1

Cryo-EM structure of vaccine-elicited antibody 0PV-b.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-3-3-3-3-mer
Ligands
21 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
9 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
9 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kong, R. et al., Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization. Cell (2019)
Release Date
2019-08-07
Peptides
Envelope glycoprotein gp41: AIQ
BG505 gp120: BJR
0PV-b.01 heavy: CKS
0PV-b.01 light: DLT
PGT122 heavy: EMU
PGT122 light: FNV
VRC03 heavy: GOW
VRC03 light: HPX
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
I
O
Q
D
B
G
J
E
R
P
C
H
K
A
S
M
D
L
L
C
T
N
E
m
M
F
U
Q
F
n
N
I
V
R
G
q
O
J
W
S
H
r
P
K
X
T

Envelope glycoprotein gp41

Toggle Identical (AIQ)

BG505 gp120

Toggle Identical (BJR)

0PV-b.01 heavy

Toggle Identical (CKS)

0PV-b.01 light

Toggle Identical (DLT)

PGT122 heavy

Toggle Identical (EMU)

PGT122 light

Toggle Identical (FNV)

VRC03 heavy

Toggle Identical (GOW)

VRC03 light

Toggle Identical (HPX)

Related Entries With Identical Sequence

3se8.1 | 4cc8.1 | 4jy5.1 | 4nco.1 | 4tvp.1 | 4zmj.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyj.1 | 5fyk.1 | 5fyl.1 | 5i8h.1 | 5i8h.2 | 5jxa.1 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6b0n.1  more...