SMTL ID : 6nf2.1

Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-3-3-3-3-mer
Ligands
15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
6 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
12 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kong, R. et al., Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization. Cell (2019)
Release Date
2019-07-24
Peptides
Envelope glycoprotein gp120: AGQ
Envelope glycoprotein gp41: BIR
VRC03 Heavy Chain: CNV
VRC03 Light Chain: DMU
PGT122 Heavy Chain: EJS
PGT122 Light Chain: FKT
0PV-c.01 Heavy Chain: HOW
0PV-c.01 Light Chain: LPX
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
G
G
Q
Q
B
B
I
I
R
R
C
C
N
N
V
V
D
D
M
M
U
U
E
E
J
J
S
S
F
F
K
K
T
T
H
H
O
O
W
W
L
L
P
P
X
X

Envelope glycoprotein gp120

Toggle Identical (AGQ)

Envelope glycoprotein gp41

Toggle Identical (BIR)

VRC03 Heavy Chain

Toggle Identical (CNV)

VRC03 Light Chain

Toggle Identical (DMU)

PGT122 Heavy Chain

Toggle Identical (EJS)

PGT122 Light Chain

Toggle Identical (FKT)

0PV-c.01 Heavy Chain

Toggle Identical (HOW)

0PV-c.01 Light Chain

Toggle Identical (LPX)

Related Entries With Identical Sequence

3se8.1 | 4cc8.1 | 4jy5.1 | 4nco.1 | 4tvp.1 | 4zmj.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyj.1 | 5fyk.1 | 5fyl.1 | 5i8h.1 | 5i8h.2 | 5jxa.1 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6b0n.1  more...