SMTL ID : 7lxv.1

Structure of human 20S proteasome with bound MPI-5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

2 x YHD: N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide(Covalent)

YHD.1: 12 residues within 4Å: Chain K: T.1, R.19, A.20, T.21, V.31, K.32, M.45, G.47, A.49, S.53, Y.169 Chain L: Y.130 7 PLIP interactions: 7 interactions with chain K Hydrophobic interactions: K:A.20, K:V.31, K:M.45, K:A.49 Hydrogen bonds: K:T.1, K:T.21, K:G.47 YHD.2: 12 residues within 4Å: Chain Y: T.1, R.19, A.20, T.21, V.31, K.32, M.45, G.47, A.49, S.53, Y.169 Chain Z: Y.130 7 PLIP interactions: 7 interactions with chain Y Hydrophobic interactions: Y:A.20, Y:V.31, Y:M.45, Y:A.49 Hydrogen bonds: Y:T.1, Y:T.21, Y:G.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, S.C. et al., Design of proteasome inhibitors with oral efficacy in vivo against Plasmodium falciparum and selectivity over the human proteasome. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-09-22

Peptides

Proteasome subunit alpha type-2: AO
Proteasome subunit alpha type-4: BP
Proteasome subunit alpha type-7: CQ
Proteasome subunit alpha type-5: DR
Proteasome subunit alpha type-1: ES
Proteasome subunit alpha type-3: FT
Proteasome subunit alpha type-6: GU
Proteasome subunit beta type-7: HV
Proteasome subunit beta type-3: IW
Proteasome subunit beta type-2: JX
Proteasome subunit beta type-5: KY
Proteasome subunit beta type-1: LZ
Proteasome subunit beta type-4: M0
Proteasome subunit beta type-6: N1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

Proteasome subunit alpha type-2

Proteasome subunit alpha type-4

Proteasome subunit alpha type-7

Proteasome subunit alpha type-5

Proteasome subunit alpha type-1

Proteasome subunit alpha type-3

Proteasome subunit alpha type-6

Proteasome subunit beta type-7

Proteasome subunit beta type-3

Proteasome subunit beta type-2

Proteasome subunit beta type-5

Proteasome subunit beta type-1

Proteasome subunit beta type-4

Proteasome subunit beta type-6

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